Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs2516520 | chr21:45526076 | C/T | 7.35E-14 | 403 | 3.15 | 13.57 | 15.6 | KM Plot |
| LGG | rs2518565 | chr1:159070113 | A/G | 7.23E-6 | 401 | 17.83 | 13.7 | 15.47 | KM Plot |
| LGG | rs253596 | chr5:155970466 | A/C | 5.06E-6 | 406 | 15.27 | 15.3 | 15.37 | KM Plot |
| LGG | rs253601 | chr5:155966483 | T/C | 5.12E-6 | 406 | 15.33 | 15.23 | 15.37 | KM Plot |
| LGG | rs253605 | chr5:155994533 | C/T | 5.15E-6 | 407 | 15.45 | 15.17 | 15.37 | KM Plot |
| LGG | rs2547118 | chr19:16807428 | G/C | 2.36E-8 | 397 | 3.58 | 10.27 | 15.97 | KM Plot |
| LGG | rs2602431 | chr16:81070697 | A/G | 7.71E-5 | 407 | 11.7 | 16.27 | 14.93 | KM Plot |
| LGG | rs2644046 | chr5:41529448 | C/T | 1.98E-6 | 407 | 15.17 | 16.6 | 9.48 | KM Plot |
| LGG | rs2656894 | chr5:155949781 | G/C | 3.93E-6 | 400 | 15.73 | 15.23 | 15.13 | KM Plot |
| LGG | rs2704666 | chr7:16516665 | A/T | 4.53E-5 | 407 | 15.03 | 17.03 | 12.03 | KM Plot |
| LGG | rs276370 | chr6:27915087 | C/T | 5.17E-5 | 407 | 14.85 | 16.28 | 14.8 | KM Plot |
| LGG | rs280453 | chr5:156037220 | G/T | 2.6E-5 | 407 | 16.67 | 14.43 | 11.17 | KM Plot |
| LGG | rs280455 | chr5:156037605 | G/A | 2.6E-5 | 407 | 16.67 | 14.43 | 11.17 | KM Plot |
| LGG | rs280458 | chr5:156039424 | G/A | 1.64E-5 | 407 | 16.45 | 14.37 | 10.53 | KM Plot |
| LGG | rs280459 | chr5:156039533 | A/G | 2.76E-5 | 405 | 16.6 | 14.45 | 11.17 | KM Plot |